Tools to Analyse RFLP Data

0RFLP-package | Tools To Analyse RFLP-Data |

BLASTdata | Example data set for BLAST data |

diffDist | Distance Matrix Computation |

FragMatch | Compute matches for RFLP data via FragMatch. |

germ | Compute matches for RFLP data via GERM. |

linCombDist | Linear Combination of Distances |

newDataGerm | Example data set from GERM software |

nrBands | Function to compute number of bands. |

read.blast | Read BLAST data |

read.rflp | Read RFLP data |

refDataGerm | Example data set from GERM software |

RFLPcombine | Combine RFLP data sets |

RFLPdata | Example data set for RFLP data |

RFLPdist | Compute distances for RFLP data. |

RFLPdist2 | Compute distances for RFLP data. |

RFLPdist2ref | Compute distance between RFLP data and RFLP reference data. |

RFLPlod | Remove bands below LOD |

RFLPplot | Function to plot RFLP data. |

RFLPqc | Quality control for RFLP data |

RFLPref | Example data set for RFLP reference |

RFLPrefplot | Function for a visual comparison of RFLP samples with... |

sim2dist | Convert similarity matrix to dist object. |

simMatrix | Similarity matrix for BLAST data. |

simulateRFLPdata | Simulate RFLP data. |

write.hclust | Cut a hierarchical cluster tree and write cluster identifiers... |

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